SureScan System User Guide
85
Feature Extraction
Location of
Feature
Extraction
The path to the FENoWindows.exe program file. By default, this location is
C:\Program Files (x86)\Agilent\MicroArray\FeatureExtraction\FeNoWindows.exe.
Run Feature
Extraction
when scan is
complete
When selected, slides are feature extracted automatically after they are scanned. To run Feature
Extraction automatically, the design files for all images must already be present in the Feature
Extraction database.
Settings dialog box – Design To Protocol Mapping
Figure 33
Settings dialog box - Design To Protocol Mapping tab
Purpose: Used to assign default scan protocols to microarray slide Design IDs. Whenever the
scanner recognizes a slide that has a scan protocol mapped to its design, the program
automatically fills in the mapped scan protocol in the Slot Table.
To open: In the Scan Control program menu bar, click
Tools > Settings
and then click
Design To
Protocol Mapping
.
Design ID
For Agilent microarray slides, you can determine the Design ID from the barcode. All barcodes
start with 25; the next five digits represent the Design ID. For example, the Design ID for barcode
251727810298 is 17278.
NOTE
To use Agilent CytoGenomics in auto-processing mode, do not select Run
Feature Extraction when scan is complete. (The Agilent CytoGenomics
program is not included with the SureScan Microarray Scanner System.)
