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Hardware Setup  

MS-98J4   

Mini-PCIe (Peripheral Component Interconnect Express) 

Slot

The Mini-PCIe slot is provided for WiFi modules, Bluetooth modules, TV tuner 

cards and other Mini-PCIe cards.

 

MPCIE/MSATA1

 slot supports 

Mini-PCIe

 and 

mSATA

 cards.

 

MINI_PCIE1

 slot supports 

Mini-PCIe

 cards.

Nano SIM Holder

This holder is provided for 3G, 4G, LTE, WiFi, BT, CANBus Nano SIM cards.

Important

When  adding  or  removing  expansion  cards,  make  sure  that  you  unplug  the 

power supply first. Meanwhile, read the documentation for the expansion card to 

configure any necessary hardware or software settings for the expansion card, 

such as jumpers, switches or BIOS configuration.

Summary of Contents for MS-98J4

Page 1: ...i MS 98J4 v1 x Industrial Computer Board...

Page 2: ...e owners No warranty as to accuracy or completeness is expressed or implied MSI reserves the right to make changes to this document without prior notice Revision History Revision Date V1 0 2018 10 Tec...

Page 3: ...place anything over the power cord Always Unplug the Power Cord before inserting any add on card or module All cautions and warnings on the equipment should be noted Never pour any liquid into the op...

Page 4: ...orted household waste Please use the public collection system to return recycle or treat them in compliance with the local regulations Taiwan For better environmental protection waste batteries should...

Page 5: ...sures listed below Reorient or relocate the receiving antenna Increase the separation between the equipment and receiver Connect the equipment into an outlet on a circuit different from that to which...

Page 6: ...Overview 1 1 Specifications 1 2 Layout 1 6 Rear Panel I O Options 1 7 2 Hardware Setup 2 1 Memory 2 3 Power Supply 2 4 Rear Panel I O 2 5 Connector 2 7 Jumper 2 14 Slot 2 16 3 BIOS Setup 3 1 Entering...

Page 7: ...ng the MS 98J4 an excellent industrial computer board Based on the innovative Intel Kaby Lake Skylake Processor the MS 98J4 is engineered to provide reliable performance for a wide variety of industri...

Page 8: ...ual Channel DDR4 Non ECC memory up to 2133 MHz Max 32GB Network 1 Intel I219LM GbE LAN PHY 1 Intel I211AT GbE LAN Co lay I210AT Storage 2 SATA 6Gb s ports 1 M 2 Key M 2280 slot for SSD Optional With S...

Page 9: ...default LVDS1 DP1 HDMI2 0 LVDS1 LVDS2 DP1 LVDS1 LVDS2 HDMI1 4 LVDS1 HDMI1 4 DP2 LVDS1 HDMI1 4 HDMI2 0 eDP DP1 DP2 eDP DP1 HDMI2 0 eDP LVDS2 DP1 eDP LVDS2 HDMI1 4 eDP HDMI1 4 DP2 eDP HDMI1 4 HDMI2 0 E...

Page 10: ...485 serial port box headers Optional 2 RS232 serial port box headers 2 LVDS headers 2 LVDS inverter box headers 1 eDP connector 1 SMBus box header 4 Serial port power jumpers 2 LVDS power jumpers 2 L...

Page 11: ...2 0 LVDS2 HDMI1 4 eDP LVDS1 DP2 LVDS2 DP1 LVDS1 LVDS2 DP1 LVDS 2 2 2 eDP 1 1 HDMI 2 DP 2 1 Expansion PCIe x4 1 1 M 2 Key M 2280 1 1 Rear I O LAN 2 LAN1 i219 LAN2 i210 2 LAN1 i219 LAN2 i211 1 LAN2 i211...

Page 12: ...stem Fan LVDS1 Inverter LVDS2 Inverter USB2 0 DDR4 SO DIMM Nano SIM Mini PCIe Mini PCIe mSATA M 2 Key E PS 2 KB MS ME Jumper Chassis Intrusion COM SATA PCIe x4 SATA Power Front Panel S PDIF Amplifier...

Page 13: ...GbE RJ45 Ports USB3 0 Ports HDMI2 0 Port DC Jack Mic In Jack Line Out Jack SKU2 DisplayPort GbE RJ45 Ports USB3 0 Ports DisplayPort DC Jack Mic In Jack Line Out Jack SKU3 DisplayPort GbE RJ45 Port US...

Page 14: ......

Page 15: ...llation be careful in holding the components and follow the installation procedures For some components if you install in the wrong orientation the components will not work properly Use a grounded wri...

Page 16: ...COM6 2 11 Audio Amplifier Header JAMP1 2 12 S PDIF Header JSPD1 2 12 Chassis Intrusion Header JCASE1 2 12 PS 2 Keyboard Mouse Connector JKB MS1 2 12 GPIO DIO Connector JGPIO1 2 13 eDP Connector EDP1 2...

Page 17: ...key on the slot and insert the DIMM into the slot 2 Push the DIMM gently downwards until the slot levers click and lock the DIMM in place 3 To uninstall the DIMM flip the slot levers outwards and the...

Page 18: ...SATA Power Connector JSATAPWR1 JSATAPWR2 This connector is used to provide power to SATA devices Important Make sure all power connectors are connected to the power supply to ensure stable operation o...

Page 19: ...onnector h h DC Jack This jack is used to provide power to the motherboard h h HDMI Port The High Definition Multimedia Interface HDMI is an all digital audio video interface capable of transmitting u...

Page 20: ...D LED LED Status Description Active LED Off No link Yellow Linked Blinking Data activity Speed LED Off 10 Mbps connection Green 100 Mbps connection Orange 1 Gbps connection h h USB3 0 Port The USB 3 0...

Page 21: ...speed sensor to take advantage of the fan control System Fan Power Connector SYSFAN1 The fan power connectors support system cooling fan with 12V When connecting the wire to the connectors always not...

Page 22: ...s Important Note that the pins of VCC and GND must be connected correctly to avoid possible damage Serial ATA Connector SATA1 SATA2 This connector is a high speed Serial ATA interface port Each connec...

Page 23: ...el switches LEDs and is compliant with Intel Front Panel I O Connectivity Design Guide PW LED PW LED PW SW PW SW Key 2 4 6 8 10 1 3 5 7 9 HDD LED HDD LED Reser SW Reset SW NC LED Voltage V Current mA...

Page 24: ...1 1 L V D S _ B L O N 9 L _ B K L T _ C T R L 7 L V D S _ D D C _ C L K 5 L C D _ V D D 3 L C D _ V D D 1 1 2 V 4 0 L V D S A _ C L K 2 8 L V D S B _ D A T A 0 2 6 L V D S B _ D A T A 0 2 4 G N D 2 2...

Page 25: ...6 7 8 9 422 TXD 422 TXD 422 RXD 422 RXD GND NC NC NC VCC Transmit Data Negative Transmit Data Positive Receive Data Positive Receive Data Negative Signal Ground No Connection No Connection No Connecti...

Page 26: ...ssion Chassis Intrusion Header JCASE1 This connector connects to the chassis intrusion switch cable If the computer case is opened the chassis intrusion mechanism will be activated The system will rec...

Page 27: ...2 13 MS 98J4 GPIO DIO Connector JGPIO1 This connector is provided for the General Purpose Input Output GPIO peripheral module eDP Connector EDP1 This connector is for connecting the flat eDP cable...

Page 28: ...ear the system configuration set the jumper to clear data Normal Clear CMOS 1 1 Important You can clear CMOS by shorting 2 3 pin while the system is off Then return to 1 2 pin position Avoid clearing...

Page 29: ...COMP3 JCOMP6 These jumpers specify the operation voltage of the JCOM3 JCOM6 serial ports 5V 12V 1 1 5V 12V 1 1 LVDS Power Jumper JVDD1 JVDD2 Use this jumper to specify the operation voltage of the LVD...

Page 30: ...itch by switch IC and PCIe x4 as top priority PCIe x4 slot M2_M1 M 2 Slot Key M 2280 for SSD Please install the M 2 solid state drive SSD into the M 2 slot as shown below Important Intel RST only supp...

Page 31: ...mSATA cards MINI_PCIE1 slot supports Mini PCIe cards Nano SIM Holder This holder is provided for 3G 4G LTE WiFi BT CANBus Nano SIM cards Important When adding or removing expansion cards make sure tha...

Page 32: ......

Page 33: ...message appears on the screen at system startup and requests users to run SETUP Users want to change the default settings for customized features Important Please note that BIOS update assumes technic...

Page 34: ...efore you respond and you still wish to enter Setup restart the system by turning it OFF and On or pressing the RESET button You may also restart the system by simultaneously pressing Ctrl Alt and Del...

Page 35: ...a right pointer symbol appears to the left of certain fields that means a sub menu can be launched from this field A sub menu contains additional options for a field parameter You can use arrow keys t...

Page 36: ...pecify the priority of boot devices Security Use this menu to set supervisor and user passwords Chipset This menu controls the advanced features of the onboard chipsets Power Use this menu to specify...

Page 37: ...g allows you to set the system date The date format is Day Month Date Year System Time This setting allows you to set the system time The time format is Hour Minute Second SATA Mode Selection This set...

Page 38: ...the booting sequence This delay ensures that the logo is displayed for a sufficient amount of time Therefore it is recommended that you disable this BIOS feature for a faster boot up time Bootup NumL...

Page 39: ...buffer the processor disables code execution preventing damage or worm propagation Hyper Threading The processor uses Hyper Threading technology to increase transaction rates and reduces end user res...

Page 40: ...d serial port Change Settings This setting is used to change the address IRQ settings of the specified serial port Mode Select Select an operation mode for the specified serial port Watch Dog Timer Yo...

Page 41: ...ltages temperatures and all fans speeds Smart Fan Configuration CPUFAN1 SYSFAN1 This setting enables disables the Smart Fan function Smart Fan is an excellent feature which will adjust the CPU system...

Page 42: ...stem that does not support or have any USB 1 1 2 0 driver installed such as DOS and SCO Unix Audio Controller This setting enables disables the onboard audio controller Launch OnBoard LAN OpROM These...

Page 43: ...3 11 MS 98J4 GPIO Group Configuration GPO0 GPO3 These settings control the operation mode of the specified GPIO...

Page 44: ...ting selects the video mode Boot Option Priorities This setting allows users to set the sequence of boot devices where BIOS attempts to load the disk operating system Hard Drive BBS Priorities This se...

Page 45: ...s Intrusion The field enables or disables the feature of recording the chassis intrusion status and issuing a warning message if the chassis is once opened Intel BIOS Guard Support Intel BIOS Guard Su...

Page 46: ...bles disables the ME status Manageability Features State This setting enables disables the Manageability Features State ME Unconfig on RTC Clear This setting enables disables ME firmware unconfigure o...

Page 47: ...guration ME FW Image Re Flash This setting enables disables the ME FW image reflash PTT Configuration Intel Platform Trust Technology PTT is a platform functionality for credential storage and key man...

Page 48: ...3 16 BIOS Setup ME Debug Configuration AMT Configuration Intel Active Management Technology AMT is hardware based technology for remotely managing and securing PCs out of band...

Page 49: ...ation will appear Set this item to TPM Clear to clear all data secured by TPM or None to discard the selection It is advised that users should routinely back up their TPM secured data Platform Hierarc...

Page 50: ...set to Enabled BIOS redirects and sends all contents that should be displayed on the screen to the serial COM port for display on the terminal screen Besides all data received from the serial port is...

Page 51: ...the incoming data This is particularly important where the sending device is capable of sending data much faster than the receiving device can receive it VT UTF8 Combo Key Support This setting enables...

Page 52: ...ettings Out of Band Mgmt Port This setting specifies the Out of Band Management Port Terminal Type To operate the system s console redirection you need a terminal supporting ANSI terminal protocol and...

Page 53: ...ernal Graphics Device DVMT Total Gfx Mem This setting specifies the memory size for DVMT Primary IGFX Boot Display Use the field to select the primary IGFX boot display of the system LVDS This setting...

Page 54: ...e Restores the system to the previous status before power failure or interrupt occurred Deep Sleep Mode The setting enables disables the Deep S5 power saving mode S5 is almost the same as G3 Mechanica...

Page 55: ...ivity or input signal of onchip LAN or USB devices is detected PCIE PME Ring This field specifies whether the system will be awakened from power saving modes when activity or input signal of onboard P...

Page 56: ...ized Defaults Use this menu to load the default values set by the motherboard manufacturer specifically for optimal performance of the motherboard Save as User Defaults Save changes as the user s defa...

Page 57: ...2 A 1 This appendix provides WDT Watch Dog Timer GPIO General Purpose Input Output and LVDS Backlight programming guide Appendix GPIO WDT BKL Programming...

Page 58: ...A 2 GPIO WDT BKL Programming CONTENT Abstract A 3 General Purposed IO A 4 Watchdog Timer A 5 LVDS Backlight Brightness Control A 6 SMBus Access A 7...

Page 59: ...ded for customer interest Inportb Outportb Inportl and Outportl are basic functions used for access IO ports and defined as following Inportb Read a single 8 bit I O port Outportb Write a single byte...

Page 60: ...lue from N_GPO0 port through SMBus val val 1 0 Set N_GPO0address bit 0 to 1 output high SMBus_WriteByte 0x9C 0x21 val Write back to N_GPO0 port through SMBus Example Set N_GPO1 output low val SMBus_Re...

Page 61: ...al Inportb WDT_BASE 0x05 Read current WDT setting val val 0x20 Enable WDT by set WD_EN bit 5 to 1 Outportb WDT_BASE 0x05 val Write back WDT setting 2 4 Disable WDT val Inportb WDT_BASE 0x05 Read curre...

Page 62: ...ht 1 Write 0xED into address 0x7F on SMBus device 0x42 2 Write desired backlight level from 0x0 30 to 0x10 100 into address 0x6E on SMBus device 0x42 Example Set LVDS backlight level to 0x10 100 SMBus...

Page 63: ...om SMBus device DEVID Outportb LOWORD SMBUS_BASE 0xFE Outportb LOWORD SMBUS_BASE 0x04 DEVID 1 out Base 04 DEVID 1 Outportb LOWORD SMBUS_BASE 0x03 OFFSET out Base 03 OFFSET Outportb LOWORD SMBUS_BASE 0...

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