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Last updated on Mar 2022 

of 30 minutes to allow sufficient time for it to warm up and run properly. The lamp has 
an enforced cooldown of 300 seconds (5 minutes) after shutdown where the lamp 
cannot be switched on until the 300 seconds is up.   

 

Check the timer on the power box to ensure the mercury lamp does not run past 2,000 
hours. The timer indicator on this particular lamp power box blinks when the timer 
crosses 1,900 hours.   

 

Do not look directly at the MHL when it is switched on as it can damage your eyes.  

 

Do not attempt to remove the light guide from the MHL, 

especially

 when it is on. 

Direct emission of the MHL may set off fires.  

 

If there are no users in the next 30 mins, MHL must be turned off. 

 

Never attempt to change a bulb yourself.  Please contact facility staff when you notice 
that a bulb has reached between 2,000 

 2,500 hours or is not functioning properly. 

 

Important! 

If you hear an explosion and see the burner indicator turn red from blue, 

save your work and 

evacuate immediately

 

2. Training  

Use of confocal microscopy and the online booking system is authorized by facility staff 
only. All users must attend the confocal training session conducted by the Bioimaging facility 
staff before they are allowed to access the confocal system.  

2.1 To arrange a training session: 

 

Please email Bioimaging Facility (

bioimaging@tll.org.sg

) for a training session. 

 

Fill in the necessary particulars in the form here: 

http://microscopy.tll.org.sg/pages/conf_training_form.html

  

(E.g. Lab, PI, sample, and a brief description of your project) 

 

 

We will help you identify the most appropriate microscope for your imaging needs.  

 

We will then arrange training session according to your availability within a week.  

 

Training sessions usually last 1 - 

3 hours depending on users’ previous experience.

  

 

Users receiving training are highly encouraged to bring their own samples so that 
staff can adjust trainings to your imaging needs, but if not possible, staff have their 
own samples that they can work with.  

Once you have completed the training session, we will grant you access to both the confocal 
PC and the online booking system.  Please keep in mind that only bioimaging facility 
members are allowed to conduct the training. None of your lab members are allowed to 
conduct the training for you.  

If you need a refresher or some specific advice on anything microscopy related, please 
approach any member of the Bioimaging Facility for assistance/help.  

We also offer training on the various types of image analysis and image processing software 
available here at TLL, including ImageJ/Fiji, Huygens and Imaris. 

 

 

Summary of Contents for FV3000

Page 1: ...oking and System Access 4 3 1 Acknowledgements 5 4 Operation Procedures 5 4 1 Switching ON Protocol 5 4 2 Objective lens 6 4 2 Software Initiation 7 4 3 Setting up directory to save images 8 4 4 Laser...

Page 2: ...Immersion Oil Modern immersion oil has no known hazards to human beings so far yet they can cause discomfort to a person if the immersion oil has been left on skin for too long or inhaled Therefore pl...

Page 3: ...taff before they are allowed to access the confocal system 2 1 To arrange a training session Please email Bioimaging Facility bioimaging tll org sg for a training session Fill in the necessary particu...

Page 4: ...er 6pm Sat Sun Public holidays If users require more slots in a particular week they can book on weekdays during non peak hours after 6pm on weekends Sat and Sun and on public holidays If extra time i...

Page 5: ...RT TIMING b Switch on the Master switch on the wall 1 PC 2 Wait until windows icon pops up c Switch on Stage controller box 3 CBH controller 4 d Optional Turn on the Metal Halide lamp 5 if needed e Tu...

Page 6: ...t to 10x objective or lower then click YES Cleaning the stage will take some time b Otherwise click NO to skip cleaning 4 2 Objective lens Objective lens Immersion media 1 25x 0 04 Plan Apochromat Air...

Page 7: ...n the stage mechanism This adds time to the initialization process Do not place anything on the stage mechanism until the initialization process is complete If you are not the first user of the week C...

Page 8: ...y to save all your images Please save in your folder You have several different options on where you can save your images Option 1 D or E Users shaalini create your own folder BPAE cells oir Do keep i...

Page 9: ...oduce intense background noise SD keep HV within 600 800 More than 800 will contribute to intense background noise Under PMT settings tab Mode Select VBF Average average a given number of scans to get...

Page 10: ...to zoom images only in the center Ideal zoom which satisfy the Nyquist limit can be achieved by zooming till the red arrow any zoom beyond it will result in poor resolution and result in more photoble...

Page 11: ...the laser power until red pixels disappear Increase Offset until a dusting of blue pixels in the background are observed Click LSM start to capture an image 4 7 How to do a Z stack for a 3D Image xyz...

Page 12: ...your timelapse experiment Interval FreeRun continues to capture images until it has completed your selected cycle You could always choose an interval of your choice 4 9 Reuse previous settings and ex...

Page 13: ...h the sample and return the stage to central position d Carefully clean the objective lens with Whatman lens tissue using 100 ethanol e Switch lens back to 10x 0 3 objective lens f Exit the FV31S SW s...

Page 14: ...ission please contact Bioimaging Group No stage movement Check the coarse fine movement setting near the focus and xy position knobs It is a physical button that has no electronic indication elsewhere...

Page 15: ...id white or coloured light sometimes red light might be indicative of error III Restart the main controller right at the bottom if none of the steps taken work especially if the machine has been left...

Page 16: ...and cannot be recovered Restart computer terminal Startup popup error code LAST_OPERATION_ NONCOMPLETED The last user did not shut down the program properly or the program encountered a fatal error du...

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