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CID Gas (Triple Quad only) 

Argon is recommended for use as a Collision Induced Dissociation gas for MS/MS in the triple 

quadrupole MS, with a typical flow rate of 1 mL/min. The argon must have a purity of greater 

than 99% and be regulated to 1

3 psi (0.1

0.2 bar).  

Solvent Requirements 1200L LC/MS 

Installation by a Varian Field Service Representative will normally include a basic test of the 

system’s functionality.  
Mobile phase solvents required for installation are methanol and de-ionized water. All solvents 

should be pure HPLC-grade, and degassing apparatus should be available, if required.  
You will need to provide the following glassware for diluting the standards used to mass 

calibrate the instrument:  

  two 50 mL volumetric flasks  

  two 1.0 mL pipettes 

In addition to the above, interconnect tubing will be required to complete installation of your 

system. Most of this tubing is included in the accessory kits of specific LC instrument modules.  

Additional tubing (PEEK® or Stainless Steel) may be required for installation of special valving 

or installation of modules to existing HPLC systems.  
For most analytical HPLC systems (flow rates up to 10 mL/min), 1/16" tubing with an internal 

diameter (ID) of 0.005” can be used throughout. However, 0.005" ID or smaller should always 

be used downstream of the sample injector or autosampler to prevent peak broadening. In 

addition, tubing lengths should always be kept to a minimum. 
Semiprep and Preparative systems have other requirements/limitations with regard to 

interconnect tubing. Typically, a system using flow rates up to 200 mL/min will require 1/16" OD 

tubing with an internal diameter as high as 0.040". On these systems, tubing ID used after the 

injector/autosampler should be ~0.010" smaller than tubing used in the rest of the system. On 

Prep systems, 1/8" tubing (0.062" or 0.080" ID) is typically used throughout. Always consult the 

instrument module Operator’s Manual for specific recommendations.

 

1200L GC/LC/MS 

Entrance 

Before arranging for delivery of the 1200L GC/LC/MS to your facility, please make sure that all 

passages to the site of installation are at least 36 in. (91.5 cm) wide. Allow additional room for 

maneuvering the shipping containers around corners and/or through doors. 

CAUTION

 

The 1200L MS, foreline pumps, GC, and LC are heavy items 
that require at least two fit people for lifting and moving 
safely. 

Space and Load Requirements 

The required layout for the 1200L MS with the HPLC is illustrated in Figure 4. The gas 

chromatograph must be positioned to the left of the instrument to allow connection of the 

transfer line from the GC to the MS. The 1200L MS uses two foreline pumps that should be 

positioned on the floor beneath the workbench on which the 1200L MS system sits. There is a 

96 in. (2.44m) vacuum line from the back, left of the MS that connects to the foreline pumps, 

and a pump controller that must be positioned within 80 in. (2m) of the MS. 

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1200/1200L MS Pre-installation Instructions

 

Summary of Contents for 1200 GC/MS

Page 1: ...e relative humidity can be maintained between 40 80 The lab is free of particulate matter The system workbench is free from vibrations The system area is free from electromagnetic disruption and elect...

Page 2: ...in this manual could cause failures of many types The repair of such failures is specifically excluded from the Warranty and Service contract conditions CAUTION All phases of the installation site pre...

Page 3: ...densation Operating the mass spectrometer at very low humidity may result in the accumulation and discharge of static electricity shortening the life of electronic components Operating the system at h...

Page 4: ...hrough doors CAUTION The 1200 MS foreline pump and gas chromatograph are heavy items that require at least two fit people for lifting and moving safely Space and Load Requirements The recommended layo...

Page 5: ...on devices or test equipment we recommend a separate dedicated power source for their operation Never plug the mass spectrometer and the chromatograph into the same power source or you may overload th...

Page 6: ...ferably flame treated or solvent washed Ammonia 5 0 Research Grade 99 999 purity A two stage 0 15 psi 0 1 bar pressure regulator that has a stainless steel diaphragm is recommended The output pressure...

Page 7: ...ation Your GC Accessory Kit includes a GC MS Gas Clean Oxygen Moisture filter CP 17973 and filter base This easy to remove gas filter cartridge combines three highly adsorptive materials in one filter...

Page 8: ...hin 10 ft 3m of the rear of the 1200L NOTE See Appendix 1 for exact module specifications Power Requirements 1200L GC MS The 1200L GC MS system requires one dedicated duplex single phase power source...

Page 9: ...1200L GC MS CI Reagent Gases The CI mode for the 1200L MS typically uses methane isobutane or ammonia The amount of gas consumed during CI operation is approximately 1 to 2 mL min The CI reagent gas...

Page 10: ...ate precautions when using Anhydrous Ammonia and for compliance with all governmental regulations It is the operator s responsibility to understand and adhere to all safe laboratory practices concerni...

Page 11: ...sed with your filter 1200L LC MS Entrance Before arranging for delivery of the 1200L LC MS to your facility please make sure that all passages to the site of installation are at least 36 in 91 5 cm wi...

Page 12: ...rces with earth grounds hard wired to the main power panel ground and one 230V 20A power source One of these fourplex power sources is for the mass spectrometer computer and monitor the other fourplex...

Page 13: ...he CEE 7 7 plug and outlet are shown in Appendix 3 Figure 5 c Gas Requirements 1200L LC MS Nitrogen A Nitrogen gas supply capable of providing up to 12L min of gas regulated at 80 psi is required as a...

Page 14: ...ld always be kept to a minimum Semiprep and Preparative systems have other requirements limitations with regard to interconnect tubing Typically a system using flow rates up to 200 mL min will require...

Page 15: ...power sources with earth grounds hard wired to the main power panel ground for the HPLC MS and computer and one 230V 20A power source for the foreline pumps If you have additional sample preparation d...

Page 16: ...g and corresponding outlet are shown in Appendix 3 Figure 5 a NEMA 5 20P plugs are rated at 20A and 120 Vac The power cables for the computer monitor and printer are approximately 78 in 2m long They a...

Page 17: ...the line be as short as possible Methane 5 0 Research Grade 99 999 purity A two stage 0 15 psi 0 1 bar pressure regulator that has a stainless steel diaphragm is recommended The output pressure to the...

Page 18: ...Carrier Gas Helium Helium is required as a carrier gas for the GC with a minimum 99 999 ultra high purity and less than 1 0 ppm each of water oxygen and total hydrocarbons The minimum requirement is o...

Page 19: ...ing or installation of modules to existing HPLC systems For most analytical HPLC systems flow rates up to 10 mL min 1 16 tubing with an internal diameter ID of 0 005 can be used throughout However 0 0...

Page 20: ...with the observations Contact the appropriate Varian office to report the damage If no external damage is apparent receiving documents should be signed Received but not inspected to indicate that the...

Page 21: ...ted and you have accepted the conditions of delivery Spare Parts The 1200 1200L Hardware Operation Manual provides a list of spare parts for routine operation Preventive Maintenance The customer is re...

Page 22: ...325 Photodiode Array Detector 8 3 21 2 11 7 29 6 18 7 47 5 34 15 5 ProStar 330 Photodiode Array Detector 9 3 23 5 10 2 26 20 50 35 16 ProStar 335 Photodiode Array Detector 8 3 21 2 11 7 29 6 18 7 47...

Page 23: ...to 12 in 15 to 30 cm Allow vertical clearance above the instrument Dissipate heat and allow for routine maintenance 30 in 76 cm Allow additional bench space beside the Workstation keyboard Enable mous...

Page 24: ...5 Laser Printer 3 4 1 5 2 Never plug the mass spectrometer and the chromatograph into the same power source otherwise you may overload the power source Never use the free outlet on any of the power s...

Page 25: ...orten device lifetime It is important to establish the quality of the line power in your laboratory prior to installation of the 1200L LC MS and or GC MS Occasionally line power sources may be of unac...

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