background image

 

p.

 

16

 

 

 

Save

 

the

 

image

 

 

The

 

intensity

 

data

 

from

 

the

 

ROI

 

can

 

be

 

viewed

 

in

 

the

 

ROI

 

mean

 

tab

 

in

 

the

 

image

 

window

 

Note:

 

The

 

region

 

can

 

be

 

defined

 

in

 

other

 

types

 

of

 

experiments

 

with

 

or

 

without

 

time

 

lapse

 

and

 

can

 

also

 

be

 

used

 

as

 

a

 

tool

 

of

 

zooming

 

in

 

by

 

checking

 

Fit

 

Frame

 

size

 

to

 

bounding

 

rectangle

 

of

 

regions.

 

Positions

 

 

A

 

positions

 

list

 

can

 

be

 

added

 

to

 

a

 

multidimensional

 

experiment

 

in

 

which

 

all

 

of

 

the

 

settings

 

will

 

be

 

acquired

 

(channel,

 

acquisition

 

mode,

 

Z

 

stack,

 

tile,

 

time

 

series).

 

 

The

 

Positions

 

tab

 

can

 

be

 

a

 

useful

 

tool

 

in

 

managing

 

a

 

large

 

tile

 

and

 

for

 

quick

 

slide

 

scanning

 

(via

 

the

 

ocular)

 

with

 

low

 

magnification

 

before

 

moving

 

to

 

high

 

magnification

 

with

 

small

 

field

 

of

 

view.

 

 

 

Add

 

a

 

position

 

by

 

pressing

 

Positions

 

below

 

the

 

image

 

container

 

and

 

clicking

 

on

 

the

 

image

 

container

 

that

 

was

 

just

 

acquired

 

at

 

the

 

current

 

stage

 

position

  

 

Check

 

Positions

 

at

 

the

 

Multidimensional

 

Acquisition

 

options.

 

 

At

 

the

 

Positions

 

tab

 

move

 

to

 

a

 

position

 

in

 

the

 

list

 

by

 

selecting

 

and

 

pressing

 

Move

 

to

 

 

A

 

position

 

can

 

also

 

be

 

added

 

by

 

pressing

 

Add

 

in

 

the

 

Positions

 

tab

 

Note

:

 

If

 

you

 

use

 

the

 

positions

 

list

 

only

 

to

 

locate

 

saved

 

positions

 

uncheck

 

Positions

 

from

 

the

 

Multidimensional

 

Acquisition

 

options

 

before

 

pressing

 

Start

 

Experiment,

 

otherwise

 

your

 

settings

 

will

 

be

 

acquired

 

at

 

every

 

position

 

in

 

the

 

list.

  

 

Note

 

you

 

can

 

use

 

multiple

 

options

 

in

 

the

 

multidimensional

 

scanning

 

for

 

example

 

Z

 

stack

 

&

 

tile

 

Time

 

series,

 

bleaching,

 

ROI

 

&

 

Z

 

stack

 

and

 

positions.

 

 

Summary of Contents for LSM 700

Page 1: ...2 Objectives 2 Filter turret 2 Laser lines 3 Light Path 3 Start up 4 Sample mounting and viewing 5 Software 5 Sample viewing 6 Acquisition 8 LSM Channel mode confocal setting 8 Configuration 8 Acquis...

Page 2: ...pectral data point Hardware The microscope The LSM 700 is attached to an upright microscope Axio Imager Z2 Objectives Position Objective lens Magnification NA coverslip Working distance Immersion Parf...

Page 3: ...mission passes through the pinhole aperture and the out of focus light is eliminated 5 6 The variable secondary dichroic beamsplitter VSD is coated with a variable coating that between 420nm 630nm acc...

Page 4: ...ng order In the power strips turn on switches 1 2 Turn on the stage controller 3 Rotate clockwise the silver key in the lasers electronic unit 4 Turn on the computer and log in User name multilabs Pas...

Page 5: ...Light switch between the ocular and the confocal Via the touch pad 1 Choose the preferred objective 2 Choose the proper filter set and open the TL RL shutter Software Log into BookitLab and activate...

Page 6: ...tage to I II or III according to the objective lens see objective lens info on touchpad If you are acquiring transmitted channel set up Kohler illumination 1 Bring the sample into focus 2 Close the fi...

Page 7: ...p 7 2 5 3 4...

Page 8: ...ocal Configuration It is highly recommended to seek BCF staff s advice for new fluorophores exact name or new combinations Choose one Load a saved configuration from the Experiment Manager Reuse setti...

Page 9: ...ThermoFisher Chroma 1 Laser lines 2 Main dichroic mirror 3 PMTs PMT1 and PMT2 4 Variable secondary dichroic beamsplitter VSD 5 Emission Filter selection 6 Emission spectrum with Graphic representatio...

Page 10: ...logy experiments Frame size 512X512 Speed 8 Averaging Method mean in most cases in low signal with low noise Sum method may be useful Number 1 Mode frame for fixative sample for live cells and in case...

Page 11: ...lack level black blue pixels in the image o Set the PMT gain to 550 600 o Set the Laser it is recommended to use the lowest as possible and to increase gain master o In case of low signal with high la...

Page 12: ...ng to the SNR Press Snap in the start buttons Save the image press in the Images and Documents tab right hand side of the window and save in the directory D Users data PI name MM YYYY User name YYYY M...

Page 13: ...uch as brightness correction over z Time series In the Multidimensional Acquisition options check Time series a new tab Time Series will appear under the Multidimensional Acquisition Section Define nu...

Page 14: ...mended option the process can be configured in the processing main tool tab In the Acquisition mode tab Frame size Press optimal Zoom It is recommended to set the zoom above 1 2 Scanning speed 7 Avera...

Page 15: ...After a single scan in the Regions tab choose one of the ROI tools and draw on the acquired image the dimensions can also be set manually in the Width Height textboxes Define which process will be per...

Page 16: ...before moving to high magnification with small field of view Add a position by pressing Positions below the image container and clicking on the image container that was just acquired at the current st...

Page 17: ...lose the ZEN software Log off from your account in the BookItlab window Check if another user has a reservation if yes verify his her arrival If you are the last user for the day or the next reservati...

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